TA B/B with Miche Track chainsett

I have just fitted a TA Axis light B?B to my newly re-painted track bike , when fitting the Miche Primato track chainsett ,the inside of the left hand crank is rubbing on the alloy cup when I tighten the crank bolt , should I gently file some off the crank or should I get another chainsett that wont rub?
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Is the TA bottom bracket taper JIS or ISO? Was the previous bb the same? If it's different then that would probably explain why you're having this problem, i.e. the crank would sit further up the taper on one.
http://www.totalcycling.com/index.php/p ... miche.html