front mech indexing

On a road bike if my shimano brake/gear handle has a two click index does this automatically mean my front mech is fro a triple? i have a double chainring but my gearing has a two click index (ie three positions) is this set through the gearshifter handle or the front mech? ie if I have got the wrong front mech and I change it to a double will this stop the 2 click index (Idoubt it) how do i just make it click/index once??
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Eg. If you notice the chain rubbing the front derailleur when riding on the big chain ring and largest rear sprocket you can give the shifter a click and the middle ground should let the chain run freely.
also it;s the shifters that dictate the double / triple thing and confusingly the triple has 4 clicks (positions) for the same reason!
What do I ride? Now that's an Enigma!